figureflow.figure_panel.FigurePanel.annotate_channel_within_image

figureflow.figure_panel.FigurePanel.annotate_channel_within_image = <function FigurePanel.annotate_channel_within_image>

Extract channel number from file name (__cx..x-x…x-x…x). Annotate corresponding channel_names with corresponding color in image. Each file cannhave multiple channels specified (for overlap images with more than one channel in different colors).

Parameters:

• channel_names – Names of channels that will be annotated in image. The index in the list corresponds to the channel number in the image filename

• channel_colors – Colors in which names of channels will be annotated in image. The index in the list corresponds to the channel number in the image filename if None, defaults for colors to cmaps used to display channel/s

• position – define where the timestamp should be added set as “first_dimension-second dimension” - e.g. “bottom-left” or “top-right”

• color – Color of label

• images –

  list of dict or dict

  dict specifies on which images should be drawn

  the key is the category and the value is a list of allowed values

• only_show_in_rows – list of rows in which the labels should be displayed, if None display in all rows

• only_show_in_columns – list of columns in which the labels should be displayed, if None display in all columns

• string_separating_channels – For composites with multiple channels add this string between channels maximum one space in a row is allowed

• padding – Padding in inches of label from image edges